IL_7AZS_313

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_313 not in the Motif Atlas

Geometric match to IL_7RQB_091

Geometric discrepancy: 0.0638

The information below is about IL_7RQB_091

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

7AZS|1|23SB|A|2468
7AZS|1|23SB|G|2469
*
7AZS|1|23SB|C|2513
7AZS|1|23SB|C|2514
7AZS|1|23SB|U|2515

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain ASIB

Transfer RNA; tRNA

Chain L27B

50S ribosomal protein L27

Chain L3B

50S ribosomal protein L3