IL_7AZS_325

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUAGUAC*GGACCGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_325 not in the Motif Atlas

Geometric match to IL_8OI5_139

Geometric discrepancy: 0.3801

The information below is about IL_8OI5_139

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.2

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

7AZS|1|23SB|C|2666
7AZS|1|23SB|C|2667
7AZS|1|23SB|U|2668
7AZS|1|23SB|A|2669
7AZS|1|23SB|G|2670
7AZS|1|23SB|U|2671
7AZS|1|23SB|A|2672
7AZS|1|23SB|C|2673
*
7AZS|1|23SB|G|2678
7AZS|1|23SB|G|2679
7AZS|1|23SB|A|2680
7AZS|1|23SB|C|2681
7AZS|1|23SB|C|2682
7AZS|1|23SB|G|2683
7AZS|1|23SB|G|2684

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L6B

50S ribosomal protein L6