IL_7AZS_342
3D structure
- PDB id
- 7AZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7AZS_342 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.0799
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
7AZS|1|5SB|C|73
7AZS|1|5SB|G|74
7AZS|1|5SB|A|75
7AZS|1|5SB|U|76
7AZS|1|5SB|G|77
7AZS|1|5SB|G|78
7AZS|1|5SB|U|79
7AZS|1|5SB|A|80
7AZS|1|5SB|C|81
*
7AZS|1|5SB|G|100
7AZS|1|5SB|G|101
7AZS|1|5SB|A|102
7AZS|1|5SB|G|103
7AZS|1|5SB|A|104
7AZS|1|5SB|G|105
7AZS|1|5SB|U|106
7AZS|1|5SB|A|107
7AZS|1|5SB|G|108
Current chains
- Chain 5SB
- 5S rRNA
Nearby chains
- Chain 23SB
- Large subunit ribosomal RNA; LSU rRNA
- Chain L16B
- 50S ribosomal protein L16
- Chain L25B
- 50S ribosomal protein L25
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