IL_7AZS_349

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

G(4OC)C(5MC)*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_349 not in the Motif Atlas

Homologous match to IL_4LFB_068

Geometric discrepancy: 0.0672

The information below is about IL_4LFB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7AZS|1|16SA|G|2029
7AZS|1|16SA|4OC|2030
7AZS|1|16SA|C|2031
7AZS|1|16SA|5MC|2032
*
7AZS|1|16SA|G|2120
7AZS|1|16SA|UR3|2121
7AZS|1|16SA|A|2122
7AZS|1|16SA|A|2123
7AZS|1|16SA|C|2124

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain 23SA

Large subunit ribosomal RNA; LSU rRNA

Chain MRNA

mRNA

Chain PSIA

Transfer RNA; tRNA