IL_7AZY_041

3D structure

PDB id

7AZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Context-specific inhibition of eukaryotic translation by macrolide antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

2.877 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZY_041 not in the Motif Atlas

Geometric match to IL_5J7L_061

Geometric discrepancy: 0.1284

The information below is about IL_5J7L_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7AZY|1|E|A|1009
7AZY|1|E|G|1010
7AZY|1|E|A|1011
*
7AZY|1|E|U|1039
7AZY|1|E|A|1040
7AZY|1|E|U|1041

Current chains

Chain E

25S ribosomal RNA

Nearby chains

Chain o

60S ribosomal protein L10

Chain t

60S ribosomal protein L5