IL_7AZY_054

3D structure

PDB id

7AZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Context-specific inhibition of eukaryotic translation by macrolide antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

2.877 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

7AZY|1|E|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZY_054 not in the Motif Atlas

Homologous match to IL_5TBW_056

Geometric discrepancy: 0.4601

The information below is about IL_5TBW_056

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7AZY|1|E|G|1262
7AZY|1|E|A|1263
7AZY|1|E|G|1264
7AZY|1|E|U|1265
7AZY|1|E|G|1266
*
7AZY|1|E|C|1275
7AZY|1|E|U|1276
7AZY|1|E|C|1277

Current chains

Chain E

25S ribosomal RNA

Nearby chains