IL_7AZY_062

3D structure

PDB id

7AZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Context-specific inhibition of eukaryotic translation by macrolide antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

2.877 Å

Loop

Sequence

GCC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZY_062 not in the Motif Atlas

Geometric match to IL_4LFB_041

Geometric discrepancy: 0.39

The information below is about IL_4LFB_041

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

7AZY|1|E|G|1561
7AZY|1|E|C|1562
7AZY|1|E|C|1563
*
7AZY|1|E|G|1577
7AZY|1|E|C|1578

Current chains

Chain E

25S ribosomal RNA

Nearby chains

Chain G

5.8S ribosomal RNA; 5.8S rRNA

Chain I

60S ribosomal protein L25

Chain b

60S ribosomal protein L8-A

Chain x

60S ribosomal protein L2-A