IL_7B5K_001
3D structure
- PDB id
- 7B5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7B5K_001 not in the Motif Atlas
- Homologous match to IL_5J7L_245
- Geometric discrepancy: 0.0728
- The information below is about IL_5J7L_245
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7B5K|1|A|G|24
7B5K|1|A|U|25
7B5K|1|A|G|26
7B5K|1|A|G|27
7B5K|1|A|A|28
7B5K|1|A|U|29
7B5K|1|A|G|30
*
7B5K|1|A|C|510
7B5K|1|A|U|511
7B5K|1|A|G|512
7B5K|1|A|A|513
7B5K|1|A|A|514
7B5K|1|A|A|515
7B5K|1|A|C|516
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain Q
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L22
Coloring options: