3D structure

PDB id
7B5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GUAAG*CGUUAUAAC
Length
14 nucleotides
Bulged bases
7B5K|1|A|U|102
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7B5K_004 not in the Motif Atlas
Homologous match to IL_5J7L_248
Geometric discrepancy: 0.0901
The information below is about IL_5J7L_248
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_37015.1
Basepair signature
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L
Number of instances in this motif group
1

Unit IDs

7B5K|1|A|G|81
7B5K|1|A|U|82
7B5K|1|A|A|83
7B5K|1|A|A|84
7B5K|1|A|G|85
*
7B5K|1|A|C|97
7B5K|1|A|G|98
7B5K|1|A|U|99
7B5K|1|A|U|100
7B5K|1|A|A|101
7B5K|1|A|U|102
7B5K|1|A|A|103
7B5K|1|A|A|104
7B5K|1|A|C|105

Current chains

Chain A
23S rRNA

Nearby chains

Chain U
50S ribosomal protein L24
Chain Y
50S ribosomal protein L29

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2219 s