3D structure

PDB id
7B5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CCUGAAUC*GUGAG
Length
13 nucleotides
Bulged bases
7B5K|1|A|G|277
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7B5K_009 not in the Motif Atlas
Homologous match to IL_5J7L_253
Geometric discrepancy: 0.3606
The information below is about IL_5J7L_253
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_77870.1
Basepair signature
cWW-L-R-L-tHS-L-cWW-L-cWW
Number of instances in this motif group
2

Unit IDs

7B5K|1|A|C|274
7B5K|1|A|C|275
7B5K|1|A|U|276
7B5K|1|A|G|277
7B5K|1|A|A|278
7B5K|1|A|A|279
7B5K|1|A|U|280
7B5K|1|A|C|281
*
7B5K|1|A|G|359
7B5K|1|A|U|360
7B5K|1|A|G|361
7B5K|1|A|A|362
7B5K|1|A|G|363

Current chains

Chain A
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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