IL_7B5K_026

3D structure

PDB id

7B5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GA*UGC

Length

5 nucleotides

Bulged bases

7B5K|1|A|G|914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B5K_026 not in the Motif Atlas

Homologous match to IL_5J7L_271

Geometric discrepancy: 0.1079

The information below is about IL_5J7L_271

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

7B5K|1|A|G|862
7B5K|1|A|A|863
*
7B5K|1|A|U|913
7B5K|1|A|G|914
7B5K|1|A|C|915

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16