3D structure

PDB id
7B5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UAUGUAG*UGAAA
Length
12 nucleotides
Bulged bases
7B5K|1|A|U|1714
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7B5K_065 not in the Motif Atlas
Homologous match to IL_5J7L_309
Geometric discrepancy: 0.1022
The information below is about IL_5J7L_309
Detailed Annotation
6x5 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_88269.4
Basepair signature
cWW-tWW-cSH-tWH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

7B5K|1|A|U|1712
7B5K|1|A|A|1713
7B5K|1|A|U|1714
7B5K|1|A|G|1715
7B5K|1|A|U|1716
7B5K|1|A|A|1717
7B5K|1|A|G|1718
*
7B5K|1|A|U|1742
7B5K|1|A|G|1743
7B5K|1|A|A|1744
7B5K|1|A|A|1745
7B5K|1|A|A|1746

Current chains

Chain A
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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