3D structure

PDB id
7B5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GUGUAGGAUAG*CC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7B5K_085 not in the Motif Atlas
Geometric match to IL_1KXK_003
Geometric discrepancy: 0.2938
The information below is about IL_1KXK_003
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_42626.2
Basepair signature
cWW-cWW
Number of instances in this motif group
14

Unit IDs

7B5K|1|A|G|2110
7B5K|1|A|U|2111
7B5K|1|A|G|2112
7B5K|1|A|U|2113
7B5K|1|A|A|2114
7B5K|1|A|G|2115
7B5K|1|A|G|2116
7B5K|1|A|A|2117
7B5K|1|A|U|2118
7B5K|1|A|A|2119
7B5K|1|A|G|2120
*
7B5K|1|A|C|2178
7B5K|1|A|C|2179

Current chains

Chain A
23S rRNA

Nearby chains

Chain 9
Transfer RNA; tRNA

Coloring options:


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