IL_7B5K_111
3D structure
- PDB id
- 7B5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGUG*CUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7B5K_111 not in the Motif Atlas
- Homologous match to IL_5J7L_353
- Geometric discrepancy: 0.0778
- The information below is about IL_5J7L_353
- Detailed Annotation
- Multiple bulged bases with non-canonical cWW
- Broad Annotation
- Multiple bulged bases with non-canonical cWW
- Motif group
- IL_64231.5
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
7B5K|1|A|G|2843
7B5K|1|A|G|2844
7B5K|1|A|U|2845
7B5K|1|A|G|2846
*
7B5K|1|A|C|2870
7B5K|1|A|U|2871
7B5K|1|A|A|2872
7B5K|1|A|A|2873
7B5K|1|A|C|2874
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain N
- 50S ribosomal protein L17
- Chain P
- 50S ribosomal protein L19
Coloring options: