IL_7B5K_112

3D structure

PDB id

7B5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B5K_112 not in the Motif Atlas

Homologous match to IL_5J7L_354

Geometric discrepancy: 0.0812

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

7B5K|1|A|U|2847
7B5K|1|A|G|2848
7B5K|1|A|U|2849
7B5K|1|A|A|2850
7B5K|1|A|A|2851
7B5K|1|A|G|2852
*
7B5K|1|A|U|2865
7B5K|1|A|U|2866
7B5K|1|A|G|2867
7B5K|1|A|A|2868
7B5K|1|A|G|2869

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19