3D structure

PDB id
7B5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GGAGG*CGUUAC
Length
11 nucleotides
Bulged bases
7B5K|1|a|U|485
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7B5K_139 not in the Motif Atlas
Geometric match to IL_5J7L_022
Geometric discrepancy: 0.111
The information below is about IL_5J7L_022
Detailed Annotation
tSH-tHW-tWW
Broad Annotation
No text annotation
Motif group
IL_88269.4
Basepair signature
cWW-tWW-cSH-tWH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

7B5K|1|a|G|446
7B5K|1|a|G|447
7B5K|1|a|A|448
7B5K|1|a|G|449
7B5K|1|a|G|450
*
7B5K|1|a|C|483
7B5K|1|a|G|484
7B5K|1|a|U|485
7B5K|1|a|U|486
7B5K|1|a|A|487
7B5K|1|a|C|488

Current chains

Chain a
16S rRNA

Nearby chains

Chain d
30S ribosomal protein S4
Chain p
30S ribosomal protein S16

Coloring options:


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