IL_7B5K_187

3D structure

PDB id

7B5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAGGC*GCCGACCUUGAAAUAC

Length

22 nucleotides

Bulged bases

7B5K|1|A|A|2163, 7B5K|1|A|C|2164, 7B5K|1|A|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7B5K|1|A|G|2124
7B5K|1|A|G|2125
7B5K|1|A|A|2126
7B5K|1|A|G|2127
7B5K|1|A|G|2128
7B5K|1|A|C|2129
*
7B5K|1|A|G|2159
7B5K|1|A|C|2160
7B5K|1|A|C|2161
7B5K|1|A|G|2162
7B5K|1|A|A|2163
7B5K|1|A|C|2164
7B5K|1|A|C|2165
7B5K|1|A|U|2166
7B5K|1|A|U|2167
7B5K|1|A|G|2168
7B5K|1|A|A|2169
7B5K|1|A|A|2170
7B5K|1|A|A|2171
7B5K|1|A|U|2172
7B5K|1|A|A|2173
7B5K|1|A|C|2174

Current chains

Chain A

23S rRNA

Nearby chains

Chain 9

Transfer RNA; tRNA