3D structure

PDB id
7B7D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
UUUCGA*UG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7B7D_020 not in the Motif Atlas
Homologous match to IL_4V88_403
Geometric discrepancy: 0.4298
The information below is about IL_4V88_403
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_85724.1
Basepair signature
cWW-L-cWW-L-L-R
Number of instances in this motif group
2

Unit IDs

7B7D|1|2|U|318
7B7D|1|2|U|319
7B7D|1|2|U|320
7B7D|1|2|C|321
7B7D|1|2|G|322
7B7D|1|2|A|323
*
7B7D|1|2|U|345
7B7D|1|2|G|346

Current chains

Chain 2
18S rRNA

Nearby chains

Chain LA
Large subunit ribosomal RNA; LSU rRNA
Chain Ln
60S ribosomal protein L19-A
Chain V
40S ribosomal protein S8-A
Chain X
40S ribosomal protein S11-A

Coloring options:


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