IL_7B7D_043

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

7B7D|1|2|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_043 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1406

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7B7D|1|2|G|867
7B7D|1|2|G|868
7B7D|1|2|A|869
7B7D|1|2|C|870
*
7B7D|1|2|G|957
7B7D|1|2|U|958
7B7D|1|2|U|959
7B7D|1|2|U|960
7B7D|1|2|U|961

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

40S ribosomal protein S13

Chain f

40S ribosomal protein S27-A