3D structure

PDB id
7B7D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GUG*CC
Length
5 nucleotides
Bulged bases
7B7D|1|2|U|1052
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7B7D_053 not in the Motif Atlas
Homologous match to IL_4V88_439
Geometric discrepancy: 0.5353
The information below is about IL_4V88_439
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.19
Basepair signature
cWW-L-cWW
Number of instances in this motif group
123

Unit IDs

7B7D|1|2|G|1051
7B7D|1|2|U|1052
7B7D|1|2|G|1053
*
7B7D|1|2|C|1066
7B7D|1|2|C|1067

Current chains

Chain 2
18S rRNA

Nearby chains

Chain G
40S ribosomal protein S17-B
Chain Q
40S ribosomal protein S1-A
Chain f
40S ribosomal protein S27-A

Coloring options:


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