IL_7B7D_099

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_099 not in the Motif Atlas

Homologous match to IL_5TBW_009

Geometric discrepancy: 0.3026

The information below is about IL_5TBW_009

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

7B7D|1|LA|C|163
7B7D|1|LA|A|164
7B7D|1|LA|A|165
*
7B7D|1|LA|U|257
7B7D|1|LA|G|258

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LN

60S ribosomal protein L13-A

Chain Ld

60S ribosomal protein L35-A