IL_7B7D_101

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_101 not in the Motif Atlas

Geometric match to IL_5TBW_501

Geometric discrepancy: 0.2988

The information below is about IL_5TBW_501

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

7B7D|1|LA|U|177
7B7D|1|LA|U|178
*
7B7D|1|LA|A|238
7B7D|1|LA|G|239
7B7D|1|LA|U|240
7B7D|1|LA|G|241

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LN

60S ribosomal protein L13-A

Chain Ld

60S ribosomal protein L35-A

Chain Lf

60S ribosomal protein L37-A