3D structure

PDB id
7B7D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GUU*AC
Length
5 nucleotides
Bulged bases
7B7D|1|LA|U|190
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7B7D_102 not in the Motif Atlas
Homologous match to IL_8C3A_013
Geometric discrepancy: 0.0839
The information below is about IL_8C3A_013
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.19
Basepair signature
cWW-L-cWW
Number of instances in this motif group
123

Unit IDs

7B7D|1|LA|G|189
7B7D|1|LA|U|190
7B7D|1|LA|U|191
*
7B7D|1|LA|A|204
7B7D|1|LA|C|205

Current chains

Chain LA
25S rRNA

Nearby chains

Chain LF
60S ribosomal protein L4-A
Chain LU
60S ribosomal protein L26-A

Coloring options:


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