3D structure

PDB id
7B7D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGAUAAAUC*GGAAUAC
Length
16 nucleotides
Bulged bases
7B7D|1|LA|A|519, 7B7D|1|LA|U|520
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7B7D_108 not in the Motif Atlas
Homologous match to IL_5TBW_019
Geometric discrepancy: 0.1243
The information below is about IL_5TBW_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_74024.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-L-R-cWW
Number of instances in this motif group
2

Unit IDs

7B7D|1|LA|G|517
7B7D|1|LA|G|518
7B7D|1|LA|A|519
7B7D|1|LA|U|520
7B7D|1|LA|A|521
7B7D|1|LA|A|522
7B7D|1|LA|A|523
7B7D|1|LA|U|524
7B7D|1|LA|C|525
*
7B7D|1|LA|G|567
7B7D|1|LA|G|568
7B7D|1|LA|A|569
7B7D|1|LA|A|570
7B7D|1|LA|U|571
7B7D|1|LA|A|572
7B7D|1|LA|C|573

Current chains

Chain LA
25S rRNA

Nearby chains

Chain LF
60S ribosomal protein L4-A
Chain LI
60S ribosomal protein L7-A
Chain LO
60S ribosomal protein L14-A
Chain Lo
60S ribosomal protein L20-A

Coloring options:


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