IL_7B7D_114

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AU*AUU

Length

5 nucleotides

Bulged bases

7B7D|1|LA|U|776

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_114 not in the Motif Atlas

Homologous match to IL_5TBW_025

Geometric discrepancy: 0.14

The information below is about IL_5TBW_025

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7B7D|1|LA|A|755
7B7D|1|LA|U|756
*
7B7D|1|LA|A|775
7B7D|1|LA|U|776
7B7D|1|LA|U|777

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LX

60S ribosomal protein L29

Chain Lm

60S ribosomal protein L18-A