IL_7B7D_115

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_115 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.1161

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7B7D|1|LA|C|758
7B7D|1|LA|U|759
7B7D|1|LA|G|760
7B7D|1|LA|A|761
7B7D|1|LA|U|762
7B7D|1|LA|G|763
*
7B7D|1|LA|C|768
7B7D|1|LA|G|769
7B7D|1|LA|G|770
7B7D|1|LA|A|771
7B7D|1|LA|U|772
7B7D|1|LA|G|773

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LN

60S ribosomal protein L13-A

Chain LW

60S ribosomal protein L28

Chain Lk

60S ribosomal protein L42-A