IL_7B7D_136

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_136 not in the Motif Atlas

Homologous match to IL_8C3A_050

Geometric discrepancy: 0.0732

The information below is about IL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7B7D|1|LA|U|1123
7B7D|1|LA|U|1124
7B7D|1|LA|U|1125
*
7B7D|1|LA|A|1133
7B7D|1|LA|G|1134
7B7D|1|LA|A|1135

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LB

5S ribosomal RNA; 5S rRNA

Chain LL

60S ribosomal protein L10

Chain LX

60S ribosomal protein L29