IL_7B7D_147

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

7B7D|1|LA|A|1386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_147 not in the Motif Atlas

Homologous match to IL_8C3A_062

Geometric discrepancy: 0.1165

The information below is about IL_8C3A_062

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7B7D|1|LA|C|1385
7B7D|1|LA|A|1386
7B7D|1|LA|G|1387
*
7B7D|1|LA|C|1420
7B7D|1|LA|G|1421

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LC

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

60S ribosomal protein L4-A

Chain LH

60S ribosomal protein L6-B

Chain La

60S ribosomal protein L32