IL_7B7D_155

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GA*UGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_155 not in the Motif Atlas

Geometric match to IL_5J7L_247

Geometric discrepancy: 0.295

The information below is about IL_5J7L_247

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

7B7D|1|LA|G|1565
7B7D|1|LA|A|1566
*
7B7D|1|LA|U|1572
7B7D|1|LA|G|1573
7B7D|1|LA|C|1574

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LC

5.8S ribosomal RNA; 5.8S rRNA

Chain LT

60S ribosomal protein L25