3D structure

PDB id
7B7D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GC*GCAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7B7D_179 not in the Motif Atlas
Geometric match to IL_5TBW_089
Geometric discrepancy: 0.1126
The information below is about IL_5TBW_089
Detailed Annotation
Bulged stacked bases
Broad Annotation
Bulged stacked bases
Motif group
IL_22551.1
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
9

Unit IDs

7B7D|1|LA|G|2276
7B7D|1|LA|C|2277
*
7B7D|1|LA|G|2307
7B7D|1|LA|C|2308
7B7D|1|LA|A|2309
7B7D|1|LA|U|2310

Current chains

Chain LA
25S rRNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain Lj
60S ribosomal protein L41-B
Chain Sn
Transfer RNA; tRNA

Coloring options:


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