IL_7B7D_200

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_200 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1274

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7B7D|1|LA|U|2835
7B7D|1|LA|C|2836
7B7D|1|LA|A|2837
7B7D|1|LA|A|2838
7B7D|1|LA|G|2839
*
7B7D|1|LA|C|2849
7B7D|1|LA|G|2850
7B7D|1|LA|A|2851
7B7D|1|LA|C|2852
7B7D|1|LA|A|2853

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LL

60S ribosomal protein L10

Chain Li

Ubiquitin-60S ribosomal protein L40

Chain Sm

Transfer RNA; tRNA