IL_7B7D_205

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

7B7D|1|LA|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_205 not in the Motif Atlas

Homologous match to IL_5TBW_111

Geometric discrepancy: 0.1348

The information below is about IL_5TBW_111

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

7B7D|1|LA|U|2891
7B7D|1|LA|A|2892
*
7B7D|1|LA|U|2909
7B7D|1|LA|A|2910
7B7D|1|LA|A|2911
7B7D|1|LA|G|2912

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LK

60S ribosomal protein L9-A

Chain LQ

60S ribosomal protein L16-A

Chain Li

Ubiquitin-60S ribosomal protein L40