3D structure

PDB id
7B7D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CAC*GCG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7B7D_215 not in the Motif Atlas
Homologous match to IL_8C3A_130
Geometric discrepancy: 0.1415
The information below is about IL_8C3A_130
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

7B7D|1|LA|C|3164
7B7D|1|LA|A|3165
7B7D|1|LA|C|3166
*
7B7D|1|LA|G|3284
7B7D|1|LA|C|3285
7B7D|1|LA|G|3286

Current chains

Chain LA
25S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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