3D structure

PDB id
7B7D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GAU*AC
Length
5 nucleotides
Bulged bases
7B7D|1|LA|A|3178
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7B7D_217 not in the Motif Atlas
Homologous match to IL_5TBW_123
Geometric discrepancy: 0.1228
The information below is about IL_5TBW_123
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

7B7D|1|LA|G|3177
7B7D|1|LA|A|3178
7B7D|1|LA|U|3179
*
7B7D|1|LA|A|3210
7B7D|1|LA|C|3211

Current chains

Chain LA
25S rRNA

Nearby chains

Chain LH
60S ribosomal protein L6-B
Chain LO
60S ribosomal protein L14-A
Chain LQ
60S ribosomal protein L16-A
Chain Lb
60S ribosomal protein L33-A
Chain Lo
60S ribosomal protein L20-A

Coloring options:


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