IL_7B7D_235
3D structure
- PDB id
- 7B7D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUCCC*GAUCA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7B7D_235 not in the Motif Atlas
- Geometric match to IL_5TBW_376
- Geometric discrepancy: 0.1591
- The information below is about IL_5TBW_376
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.9
- Basepair signature
- cWW-cSH-cWS-tSW-L-R-cWW-R
- Number of instances in this motif group
- 9
Unit IDs
7B7D|1|LB|U|32
7B7D|1|LB|U|33
7B7D|1|LB|C|34
7B7D|1|LB|C|35
7B7D|1|LB|C|36
*
7B7D|1|LB|G|41
7B7D|1|LB|A|42
7B7D|1|LB|U|43
7B7D|1|LB|C|44
7B7D|1|LB|A|45
Current chains
- Chain LB
- 5S rRNA
Nearby chains
- Chain EF
- Elongation factor 3A
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain LG
- 60S ribosomal protein L5
- Chain LM
- 60S ribosomal protein L11-B
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