IL_7BGD_019

3D structure

PDB id

7BGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUGAAG*CGUAAAA

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BGD_019 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.3542

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7BGD|1|a|U|417
7BGD|1|a|G|418
7BGD|1|a|A|419
7BGD|1|a|U|420
7BGD|1|a|G|421
7BGD|1|a|A|422
7BGD|1|a|A|423
7BGD|1|a|G|424
*
7BGD|1|a|C|435
7BGD|1|a|G|436
7BGD|1|a|U|437
7BGD|1|a|A|438
7BGD|1|a|A|439
7BGD|1|a|A|440
7BGD|1|a|A|441

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4