IL_7BGD_041

3D structure

PDB id

7BGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BGD_041 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.2552

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7BGD|1|a|C|1418
7BGD|1|a|A|1419
7BGD|1|a|C|1420
*
7BGD|1|a|G|1503
7BGD|1|a|A|1504
7BGD|1|a|A|1505
7BGD|1|a|G|1506

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain A

mRNA

Chain l

30S ribosomal protein S12