IL_7BL2_036

3D structure

PDB id

7BL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S-ObgE particle state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

7BL2|1|A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BL2_036 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1822

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

7BL2|1|A|U|1018
7BL2|1|A|U|1019
7BL2|1|A|A|1020
7BL2|1|A|A|1021
7BL2|1|A|G|1022
7BL2|1|A|U|1023
7BL2|1|A|G|1024
*
7BL2|1|A|C|1140
7BL2|1|A|U|1141
7BL2|1|A|A|1142
7BL2|1|A|A|1143
7BL2|1|A|A|1144

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13