IL_7BL2_089

3D structure

PDB id

7BL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S-ObgE particle state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BL2_089 not in the Motif Atlas

Geometric match to IL_4V9F_085

Geometric discrepancy: 0.2286

The information below is about IL_4V9F_085

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7BL2|1|A|C|2466
7BL2|1|A|C|2467
7BL2|1|A|A|2468
7BL2|1|A|A|2469
7BL2|1|A|G|2470
*
7BL2|1|A|C|2480
7BL2|1|A|G|2481
7BL2|1|A|A|2482
7BL2|1|A|C|2483
7BL2|1|A|G|2484

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9P1

GTPase ObgE/CgtA