IL_7BL3_083

3D structure

PDB id

7BL3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S-ObgE particle state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUGUGUAGGAUAG*CCUU

Length

17 nucleotides

Bulged bases

7BL3|1|A|U|2111, 7BL3|1|A|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BL3_083 not in the Motif Atlas

Geometric match to IL_5C5W_003

Geometric discrepancy: 0.2857

The information below is about IL_5C5W_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

52

Unit IDs

7BL3|1|A|A|2108
7BL3|1|A|U|2109
7BL3|1|A|G|2110
7BL3|1|A|U|2111
7BL3|1|A|G|2112
7BL3|1|A|U|2113
7BL3|1|A|A|2114
7BL3|1|A|G|2115
7BL3|1|A|G|2116
7BL3|1|A|A|2117
7BL3|1|A|U|2118
7BL3|1|A|A|2119
7BL3|1|A|G|2120
*
7BL3|1|A|C|2178
7BL3|1|A|C|2179
7BL3|1|A|U|2180
7BL3|1|A|U|2181

Current chains

Chain A

23S ribosomal RNA

Nearby chains