IL_7BL4_009

3D structure

PDB id

7BL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

7BL4|1|A|U|276, 7BL4|1|A|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BL4_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3004

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7BL4|1|A|C|274
7BL4|1|A|C|275
7BL4|1|A|U|276
7BL4|1|A|G|277
7BL4|1|A|A|278
7BL4|1|A|A|279
7BL4|1|A|U|280
7BL4|1|A|C|281
*
7BL4|1|A|G|359
7BL4|1|A|U|360
7BL4|1|A|G|361
7BL4|1|A|A|362
7BL4|1|A|G|363

Current chains

Chain A

23S ribosomal RNA

Nearby chains