3D structure

PDB id
7BL4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
7BL4|1|A|A|1127, 7BL4|1|A|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7BL4_036 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.0876
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

7BL4|1|A|G|1024
7BL4|1|A|G|1025
7BL4|1|A|G|1026
7BL4|1|A|A|1027
7BL4|1|A|A|1028
7BL4|1|A|A|1029
7BL4|1|A|C|1030
*
7BL4|1|A|G|1124
7BL4|1|A|G|1125
7BL4|1|A|A|1126
7BL4|1|A|A|1127
7BL4|1|A|G|1128
7BL4|1|A|A|1129
7BL4|1|A|U|1130
7BL4|1|A|G|1131
7BL4|1|A|U|1132
7BL4|1|A|A|1133
7BL4|1|A|A|1134
7BL4|1|A|C|1135
7BL4|1|A|G|1136
7BL4|1|A|G|1137
7BL4|1|A|G|1138
7BL4|1|A|G|1139
7BL4|1|A|C|1140

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain D
50S ribosomal protein L3
Chain J
50S ribosomal protein L13
Chain M
50S ribosomal protein L16
Chain g
50S ribosomal protein L36

Coloring options:


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