IL_7BL4_041

3D structure

PDB id

7BL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

7BL4|1|A|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BL4_041 not in the Motif Atlas

Geometric match to IL_7RQB_078

Geometric discrepancy: 0.2501

The information below is about IL_7RQB_078

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_27635.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

38

Unit IDs

7BL4|1|A|G|1087
7BL4|1|A|A|1088
7BL4|1|A|A|1089
7BL4|1|A|A|1090
*
7BL4|1|A|U|1101
7BL4|1|A|C|1102

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L36