IL_7BL4_091

3D structure

PDB id

7BL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AUAC*GUGUUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BL4_091 not in the Motif Atlas

Geometric match to IL_8P9A_467

Geometric discrepancy: 0.3947

The information below is about IL_8P9A_467

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07469.2

Basepair signature

cWW-tSH-cWW-cSH-R-cWW

Number of instances in this motif group

3

Unit IDs

7BL4|1|A|A|2459
7BL4|1|A|U|2460
7BL4|1|A|A|2461
7BL4|1|A|C|2462
*
7BL4|1|A|G|2488
7BL4|1|A|U|2489
7BL4|1|A|G|2490
7BL4|1|A|U|2491
7BL4|1|A|U|2492
7BL4|1|A|U|2493

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

GTPase ObgE/CgtA

Chain M

50S ribosomal protein L16