IL_7BOD_020

3D structure

PDB id

7BOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state M (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BOD_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0834

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7BOD|1|A|U|409
7BOD|1|A|G|410
7BOD|1|A|A|411
7BOD|1|A|A|412
7BOD|1|A|G|413
7BOD|1|A|A|414
7BOD|1|A|A|415
7BOD|1|A|G|416
*
7BOD|1|A|U|427
7BOD|1|A|G|428
7BOD|1|A|U|429
7BOD|1|A|A|430
7BOD|1|A|A|431
7BOD|1|A|A|432
7BOD|1|A|G|433

Current chains

Chain A

16S rRNA (body domain of 30S subunit)

Nearby chains

Chain D

30S ribosomal protein S4