IL_7BOD_044

3D structure

PDB id

7BOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state M (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BOD_044 not in the Motif Atlas

Homologous match to IL_4LFB_060

Geometric discrepancy: 0.1866

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7BOD|1|A|G|1416
7BOD|1|A|G|1417
7BOD|1|A|A|1418
7BOD|1|A|G|1419
*
7BOD|1|A|U|1481
7BOD|1|A|G|1482
7BOD|1|A|A|1483
7BOD|1|A|C|1484

Current chains

Chain A

16S rRNA (body domain of 30S subunit)

Nearby chains

Chain L

30S ribosomal protein S12