IL_7BOD_048

3D structure

PDB id

7BOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state M (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

7BOD|1|A|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BOD_048 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.0792

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

7BOD|1|A|C|569
7BOD|1|A|G|570
7BOD|1|A|U|571
7BOD|1|A|A|572
7BOD|1|A|A|573
7BOD|1|A|A|574
7BOD|1|A|G|575
*
7BOD|1|A|C|880
7BOD|1|A|G|881

Current chains

Chain A

16S rRNA (body domain of 30S subunit)

Nearby chains

Chain L

30S ribosomal protein S12

Chain Q

30S ribosomal protein S17