IL_7BOD_053

3D structure

PDB id

7BOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state M (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CAUG*UGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BOD_053 not in the Motif Atlas

Homologous match to IL_6CZR_168

Geometric discrepancy: 0.2946

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

7BOD|1|A|C|1412
7BOD|1|A|A|1413
7BOD|1|A|U|1414
7BOD|1|A|G|1415
*
7BOD|1|A|U|1485
7BOD|1|A|G|1486
7BOD|1|A|G|1487
7BOD|1|A|G|1488

Current chains

Chain A

16S rRNA (body domain of 30S subunit)

Nearby chains

Chain L

30S ribosomal protein S12