3D structure

PDB id
7BOE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacterial 30S ribosomal subunit assembly complex state M (Consensus refinement)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GGAGG*CGUUAC
Length
11 nucleotides
Bulged bases
7BOE|1|A|U|485
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7BOE_022 not in the Motif Atlas
Homologous match to IL_5J7L_022
Geometric discrepancy: 0.0723
The information below is about IL_5J7L_022
Detailed Annotation
tSH-tHW-tWW
Broad Annotation
No text annotation
Motif group
IL_88269.4
Basepair signature
cWW-tWW-cSH-tWH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

7BOE|1|A|G|446
7BOE|1|A|G|447
7BOE|1|A|A|448
7BOE|1|A|G|449
7BOE|1|A|G|450
*
7BOE|1|A|C|483
7BOE|1|A|G|484
7BOE|1|A|U|485
7BOE|1|A|U|486
7BOE|1|A|A|487
7BOE|1|A|C|488

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
30S ribosomal protein S4
Chain P
30S ribosomal protein S16

Coloring options:


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