IL_7BOF_020

3D structure

PDB id

7BOF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state I (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BOF_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0769

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7BOF|1|A|U|409
7BOF|1|A|G|410
7BOF|1|A|A|411
7BOF|1|A|A|412
7BOF|1|A|G|413
7BOF|1|A|A|414
7BOF|1|A|A|415
7BOF|1|A|G|416
*
7BOF|1|A|U|427
7BOF|1|A|G|428
7BOF|1|A|U|429
7BOF|1|A|A|430
7BOF|1|A|A|431
7BOF|1|A|A|432
7BOF|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4